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    U2AF1 U2 small nuclear RNA auxiliary factor 1 [ Pteropus vampyrus (large flying fox) ]

    Gene ID: 105305391, updated on 30-Mar-2024

    Summary

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    Gene symbol
    U2AF1
    Gene description
    U2 small nuclear RNA auxiliary factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus vampyrus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
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    Genomic context

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    See U2AF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889161.1 (422854..449685)

    NW_011889161.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene crystallin alpha A Neighboring gene cystathionine beta-synthase Neighboring gene 5S ribosomal RNA Neighboring gene PBX/knotted 1 homeobox 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011889161 Unplaced Scaffold Reference Pvam_2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA 3'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2AF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor U2AF 35 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Pvam_2.0

    Genomic

    1. NW_011889161.1 Reference Pvam_2.0

      Range
      422854..449685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023523176.1 → XP_023378944.1  splicing factor U2AF 35 kDa subunit

      UniProtKB/TrEMBL
      A0A6P6BV55
      Conserved Domains (2) summary
      cd12538
      Location:190 → 293
      RRM_U2AF35; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)
      pfam00642
      Location:296 → 322
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version

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