U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    SH3RF1 SH3 domain containing ring finger 1 [ Pteropus vampyrus (large flying fox) ]

    Gene ID: 105292165, updated on 30-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SH3RF1
    Gene description
    SH3 domain containing ring finger 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus vampyrus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SH3RF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888834.1 (3965902..4111765)

    NW_011888834.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene chloride voltage-gated channel 3 Neighboring gene NIMA related kinase 1 Neighboring gene uncharacterized LOC111739711 Neighboring gene carbonyl reductase 4 Neighboring gene palladin, cytoskeletal associated protein Neighboring gene uncharacterized LOC111739713

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_011888834 Unplaced Scaffold Reference Pvam_2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase SH3RF1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Pvam_2.0

    Genomic

    1. NW_011888834.1 Reference Pvam_2.0

      Range
      3965902..4111765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011360283.1 → XP_011358585.1  E3 ubiquitin-protein ligase SH3RF1

      UniProtKB/TrEMBL
      A0A6P6CGV4
      Conserved Domains (5) summary
      cd11785
      Location:826 → 880
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11930
      Location:200 → 254
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd16748
      Location:8 → 55
      RING-HC_SH3RF1; RING finger, HC subclass, found in SH3 domain-containing RING finger protein 1 (SH3RF1) and similar proteins
      cl17036
      Location:137 → 190
      SH3; Src Homology 3 domain superfamily
      cl26464
      Location:595 → 841
      Atrophin-1; Atrophin-1 family

    2. XM_023530731.1 → XP_023386499.1  E3 ubiquitin-protein ligase SH3RF1

      UniProtKB/TrEMBL
      A0A6P6CGV4
      Conserved Domains (5) summary
      cd11785
      Location:826 → 880
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11930
      Location:200 → 254
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd16748
      Location:8 → 55
      RING-HC_SH3RF1; RING finger, HC subclass, found in SH3 domain-containing RING finger protein 1 (SH3RF1) and similar proteins
      cl17036
      Location:137 → 190
      SH3; Src Homology 3 domain superfamily
      cl26464
      Location:595 → 841
      Atrophin-1; Atrophin-1 family

    3. XM_023530730.1 → XP_023386498.1  E3 ubiquitin-protein ligase SH3RF1

      UniProtKB/TrEMBL
      A0A6P6CGV4
      Conserved Domains (5) summary
      cd11785
      Location:826 → 880
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11930
      Location:200 → 254
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd16748
      Location:8 → 55
      RING-HC_SH3RF1; RING finger, HC subclass, found in SH3 domain-containing RING finger protein 1 (SH3RF1) and similar proteins
      cl17036
      Location:137 → 190
      SH3; Src Homology 3 domain superfamily
      cl26464
      Location:595 → 841
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.