U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    otud5a OTU deubiquitinase 5a [ Seriola lalandi dorsalis ]

    Gene ID: 111669626, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    otud5a
    Gene description
    OTU deubiquitinase 5a
    See related
    Ensembl:ENSSLDG00000005466
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola lalandi dorsalis (sub-species: dorsalis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Also known as
    otud5
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See otud5a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525351.1 (178101..203286)

    NW_019525351.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111669628 Neighboring gene alpha-tectorin-like Neighboring gene Pim-2 proto-oncogene, serine/threonine kinase Neighboring gene solute carrier family 35 member 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_019525351 Unplaced Scaffold Reference Sedor1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    OTU domain-containing protein 5
    Names
    OTU deubiquitinase 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sedor1 Primary Assembly

    Genomic

    1. NW_019525351.1 Reference Sedor1 Primary Assembly

      Range
      178101..203286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023426007.1 → XP_023281775.1  OTU domain-containing protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A3B4WQ05
      Related
      ENSSLDP00000006889.1, ENSSLDT00000007112.1
      Conserved Domains (3) summary
      cl19932
      Location:219 → 328
      OTU; OTU-like cysteine protease
      cl26464
      Location:26 → 102
      Atrophin-1; Atrophin-1 family
      cl27087
      Location:364 → 478
      SPOR; Sporulation related domain

    2. XM_023426008.1 → XP_023281776.1  OTU domain-containing protein 5 isoform X2

      Conserved Domains (3) summary
      cl19932
      Location:218 → 327
      OTU; OTU-like cysteine protease
      cl26464
      Location:26 → 102
      Atrophin-1; Atrophin-1 family
      cl27087
      Location:363 → 477
      SPOR; Sporulation related domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.