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    MCOLN3 mucolipin TRP cation channel 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100412379, updated on 8-Mar-2024

    Summary

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    Gene symbol
    MCOLN3
    Gene description
    mucolipin TRP cation channel 3
    See related
    Ensembl:ENSCJAG00000006859
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Also known as
    TRPML3
    Orthologs
    human mouse all
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    Genomic context

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    See MCOLN3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (119413435..119461248, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (120818225..120865884, complement)

    Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene mucolipin TRP cation channel 2 Neighboring gene uncharacterized LOC128928286 Neighboring gene uncharacterized LOC108592645 Neighboring gene dynein axonemal intermediate chain 3 Neighboring gene keratin, type II cytoskeletal 8-like Neighboring gene synapse defective Rho GTPase homolog 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cryo-electron microscopy structure of the lysosomal calcium-permeable channel TRPML3. Hirschi M, et al. Nature, 2017 Oct 19. PMID 29019979, Free PMC Article
    2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAADP-sensitive calcium-release channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mucolipin-3
    Names
    mucolipin 3
    transient receptor potential channel mucolipin 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071448.1 Reference mCalJa1.2.pat.X

      Range
      119413435..119461248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009001606.4 → XP_008999854.1  mucolipin-3 isoform X2

      UniProtKB/TrEMBL
      F6RRX1
      Conserved Domains (1) summary
      pfam08016
      Location:415 → 548
      PKD_channel; Polycystin cation channel

    2. XM_035252029.2 → XP_035107920.1  mucolipin-3 isoform X3

      UniProtKB/Swiss-Prot
      F6RG56
      UniProtKB/TrEMBL
      F6RRX1
      Conserved Domains (2) summary
      pfam08016
      Location:375 → 508
      PKD_channel; Polycystin cation channel
      cd21072
      Location:109 → 277
      ELD_TRPML3; extracytosolic/lumenal domain (ELD) found in transient receptor potential channel mucolipin 3 (TRPML3)

    3. XM_002751021.6 → XP_002751067.1  mucolipin-3 isoform X3

      See identical proteins and their annotated locations for XP_002751067.1

      UniProtKB/Swiss-Prot
      F6RG56
      UniProtKB/TrEMBL
      F6RRX1
      Related
      ENSCJAP00000012762.2
      Conserved Domains (2) summary
      pfam08016
      Location:375 → 508
      PKD_channel; Polycystin cation channel
      cd21072
      Location:109 → 277
      ELD_TRPML3; extracytosolic/lumenal domain (ELD) found in transient receptor potential channel mucolipin 3 (TRPML3)

    4. XM_009001607.4 → XP_008999855.1  mucolipin-3 isoform X1

      UniProtKB/TrEMBL
      F6RRX1
      Conserved Domains (1) summary
      pfam08016
      Location:398 → 531
      PKD_channel; Polycystin cation channel

    5. XM_009001608.4 → XP_008999856.1  mucolipin-3 isoform X3

      See identical proteins and their annotated locations for XP_008999856.1

      UniProtKB/Swiss-Prot
      F6RG56
      UniProtKB/TrEMBL
      F6RRX1
      Conserved Domains (2) summary
      pfam08016
      Location:375 → 508
      PKD_channel; Polycystin cation channel
      cd21072
      Location:109 → 277
      ELD_TRPML3; extracytosolic/lumenal domain (ELD) found in transient receptor potential channel mucolipin 3 (TRPML3)

    6. XM_035252030.2 → XP_035107921.1  mucolipin-3 isoform X3

      UniProtKB/Swiss-Prot
      F6RG56
      UniProtKB/TrEMBL
      F6RRX1
      Conserved Domains (2) summary
      pfam08016
      Location:375 → 508
      PKD_channel; Polycystin cation channel
      cd21072
      Location:109 → 277
      ELD_TRPML3; extracytosolic/lumenal domain (ELD) found in transient receptor potential channel mucolipin 3 (TRPML3)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F6RG56.1 GenPept UniProtKB/Swiss-Prot:F6RG56

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