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    sh3rf1 SH3 domain containing ring finger 1 [ Amphiprion ocellaris (clown anemonefish) ]

    Gene ID: 111566316, updated on 18-Jun-2024

    Summary

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    Gene symbol
    sh3rf1
    Gene description
    SH3 domain containing ring finger 1
    See related
    Ensembl:ENSAOCG00000014372
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amphiprion ocellaris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
    Orthologs
    human zebrafish all
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    Genomic context

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    See sh3rf1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 2 NC_072767.1 (34621670..34656529)
    101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019370019.1 (216729..251752)

    Chromosome 2 - NC_072767.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 5 Neighboring gene NIMA-related kinase 1 Neighboring gene uncharacterized LOC118470066 Neighboring gene carbonyl reductase 4 Neighboring gene palladin, cytoskeletal associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SH3RF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2253959v1 Primary Assembly

    Genomic

    1. NC_072767.1 Reference ASM2253959v1 Primary Assembly

      Range
      34621670..34656529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023266850.3 → XP_023122618.1  E3 ubiquitin-protein ligase SH3RF1

      UniProtKB/TrEMBL
      A0A3Q1B9K1, A0A3Q1CEW2
      Related
      ENSAOCP00000010143.1, ENSAOCT00000017117.2
      Conserved Domains (5) summary
      cd11785
      Location:815 → 869
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11926
      Location:433 → 487
      SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
      cd11927
      Location:133 → 186
      SH3_SH3RF1_1; First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd11930
      Location:196 → 250
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cl17238
      Location:8 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_023266861.3 → XP_023122629.1  E3 ubiquitin-protein ligase SH3RF1

      UniProtKB/TrEMBL
      A0A3Q1B9K1, A0A3Q1CEW2
      Conserved Domains (5) summary
      cd11785
      Location:815 → 869
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11926
      Location:433 → 487
      SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
      cd11927
      Location:133 → 186
      SH3_SH3RF1_1; First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd11930
      Location:196 → 250
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cl17238
      Location:8 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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