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    alyref Aly/REF export factor [ Acanthochromis polyacanthus (spiny chromis) ]

    Gene ID: 110956712, updated on 15-Mar-2024

    Summary

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    Gene symbol
    alyref
    Gene description
    Aly/REF export factor
    See related
    Ensembl:ENSAPOG00000018455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthochromis polyacanthus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See alyref in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 21 NC_067133.1 (25116036..25119210, complement)

    Chromosome 21 - NC_067133.1Genomic Context describing neighboring genes Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene Rho GDP dissociation inhibitor (GDI) alpha Neighboring gene MAPK regulated corepressor interacting protein 1 Neighboring gene protein phosphatase 1, regulatory subunit 27a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067133.1 Chromosome 21 Reference KAUST_Apoly_ChrSc

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KAUST_Apoly_ChrSc

    Genomic

    1. NC_067133.1 Reference KAUST_Apoly_ChrSc

      Range
      25116036..25119210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022202355.2 → XP_022058047.1  THO complex subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1FC82
      Related
      ENSAPOP00000015471.1
      Conserved Domains (1) summary
      cd12680
      Location:117 → 190
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

    2. XM_022202359.2 → XP_022058051.1  THO complex subunit 4 isoform X4

      Conserved Domains (1) summary
      cd12680
      Location:67 → 140
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

    3. XM_022202358.2 → XP_022058050.1  THO complex subunit 4 isoform X3

      Conserved Domains (1) summary
      cd12680
      Location:75 → 148
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

    4. XM_022202357.2 → XP_022058049.1  THO complex subunit 4 isoform X2

      Conserved Domains (1) summary
      cd12680
      Location:79 → 152
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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