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    LOC110748906 DNA (cytosine-5)-methyltransferase 1-like [ Prunus avium (sweet cherry) ]

    Gene ID: 110748906, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC110748906
    Gene description
    DNA (cytosine-5)-methyltransferase 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus avium
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC110748906 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current PAV_r1.0 (GCF_002207925.1) Unplaced Scaffold NW_018921340.1 (52676..58405, complement)

    NW_018921340.1Genomic Context describing neighboring genes Neighboring gene cancer-related nucleoside-triphosphatase homolog Neighboring gene uncharacterized LOC110748909 Neighboring gene uncharacterized LOC110748870 Neighboring gene WUSCHEL-related homeobox 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018921340 Unplaced Scaffold Reference PAV_r1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA (cytosine-5-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA (cytosine-5)-methyltransferase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus avium Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAV_r1.0

    Genomic

    1. NW_018921340.1 Reference PAV_r1.0

      Range
      52676..58405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021948881.1 → XP_021804573.1  DNA (cytosine-5)-methyltransferase 1-like

      UniProtKB/TrEMBL
      A0A6P5RS02
      Conserved Domains (4) summary
      COG0270
      Location:1118 → 1552
      Dcm; Site-specific DNA-cytosine methylase [Replication, recombination and repair]
      cd04708
      Location:931 → 1132
      BAH_plantDCM_II; BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects ...
      cd04712
      Location:760 → 897
      BAH_DCM_I; BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. ...
      pfam12047
      Location:121 → 248
      DNMT1-RFD; Cytosine specific DNA methyltransferase replication foci domain
    Nucleotide Protein
    Heading Accession and Version

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