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    TVAGG3_0587890 WASH complex subunit 5 family [ Trichomonas vaginalis G3 ]

    Gene ID: 4759795, updated on 17-May-2024

    Summary

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    Gene symbol
    TVAGG3_0587890
    Gene description
    WASH complex subunit 5 family
    Locus tag
    TVAGG3_0587890
    See related
    TrichDB:TVAGG3_0587890; VEuPathDB:TVAGG3_0587890
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Trichomonas vaginalis G3 (strain: G3, nat-host: Homo sapiens, culture-collection: ATCC:PRA-98)
    Lineage
    Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas
    Old locus tag
    TVAG_2v0587890
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    Genomic context

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    See TVAGG3_0587890 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_067204.1 (21948505..21951994, complement)

    Chromosome II - NC_067204.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene spectrin binding Neighboring gene hypothetical protein Neighboring gene protein serine/threonine kinase protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067204.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Carlton JM, et al. Science, 2007 Jan 12. PMID 17218520, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome fission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WASH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WASH complex subunit 5 family
    XP_001330805.1
    • Deepfry function prediction from predicted structure:cation binding protein;organic cyclic compound binding protein;eggNOG seed ortholog:5722.XP_001330805.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_067204.1 Reference assembly

      Range
      21948505..21951994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001330769.1 → XP_001330805.1  WASH complex subunit 5 family [Trichomonas vaginalis G3]

      See identical proteins and their annotated locations for XP_001330805.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A2EZE3
      Conserved Domains (1) summary
      pfam10266
      Location:22 → 1078
      Strumpellin; Hereditary spastic paraplegia protein strumpellin
    Nucleotide Protein
    Heading Accession and Version

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