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    ANKRD18B ankyrin repeat domain 18B [ Homo sapiens (human) ]

    Gene ID: 441459, updated on 27-Nov-2024

    Summary

    Official Symbol
    ANKRD18Bprovided by HGNC
    Official Full Name
    ankyrin repeat domain 18Bprovided by HGNC
    Primary source
    HGNC:HGNC:23644
    See related
    Ensembl:ENSG00000230453 MIM:618930; AllianceGenome:HGNC:23644
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    bA255A11.3; bA255A11.5
    Expression
    Biased expression in testis (RPKM 1.7), skin (RPKM 0.7) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See ANKRD18B in Genome Data Viewer
    Location:
    9p13.3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (33524251..33575442)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (33542752..33593966)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (33524249..33575440)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene SUGT1 pseudogene 1 Neighboring gene vomeronasal 1 receptor 47 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28298 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28299 Neighboring gene MPRA-validated peak7218 silencer Neighboring gene melanoma antigen pseudogene Neighboring gene sorting nexin 18 pseudogene 7 Neighboring gene cytochrome P450 family 4 subfamily F member 26, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33586601-33587218 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:33600012-33600952

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 18B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001353432.2NP_001340361.1  ankyrin repeat domain-containing protein 18B isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AL139008, BC009440, BF103989, DB512460, DW421358, DW441346
      UniProtKB/Swiss-Prot
      A2A2Z9
      Conserved Domains (6) summary
      cd00204
      Location:62187
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:6998
      ANK; ANK repeat [structural motif]
      pfam12001
      Location:873977
      DUF3496; Domain of unknown function (DUF3496)
      pfam13637
      Location:3488
      Ank_4; Ankyrin repeats (many copies)
      pfam14915
      Location:335625
      CCDC144C; CCDC144C protein coiled-coil region
      cl25732
      Location:468918
      SMC_N; RecF/RecN/SMC N terminal domain
    2. NM_001393611.1NP_001380540.1  ankyrin repeat domain-containing protein 18B isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL139008
      Consensus CDS
      CCDS94397.1
      UniProtKB/Swiss-Prot
      A2A2Z9
      UniProtKB/TrEMBL
      A0A8I5KZ96
      Related
      ENSP00000510683.1, ENST00000684830.1
      Conserved Domains (4) summary
      COG0419
      Location:401993
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      COG0666
      Location:62225
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:6998
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:3488
      Ank_4; Ankyrin repeats (many copies)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      33524251..33575442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      33542752..33593966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013728.1: Suppressed sequence

      Description
      NM_001013728.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    2. NM_001244752.1: Suppressed sequence

      Description
      NM_001244752.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.