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    Scimp SLP adaptor and CSK interacting membrane protein [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101955136, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Scimp
    Gene description
    SLP adaptor and CSK interacting membrane protein
    Locus tag
    H1C71_022913
    See related
    EnsemblRapid:ENSSTOG00015016539
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Scimp in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (53314099..53325720, complement)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936677.1 (2575255..2585969)

    NW_024405602.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 594 Neighboring gene small nucleolar RNA U13 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA alanine (anticodon AGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in immunological synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in tetraspanin-enriched microdomain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SLP adapter and CSK-interacting membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

      Range
      53314099..53325720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005337397.3 → XP_005337454.2  SLP adapter and CSK-interacting membrane protein

      UniProtKB/TrEMBL
      I3LXV9
      Related
      ENSSTOP00015020308.1, ENSSTOT00015022232.1
      Conserved Domains (1) summary
      pfam15050
      Location:24 → 156
      SCIMP; SCIMP protein
    Nucleotide Protein
    Heading Accession and Version

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