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    LOC110427034 coatomer subunit epsilon-1 [ Herrania umbratica ]

    Gene ID: 110427034, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110427034
    Gene description
    coatomer subunit epsilon-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Herrania umbratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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    Genomic context

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    See LOC110427034 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM216827v2 (GCF_002168275.1) Unplaced Scaffold NW_018397274.1 (438935..443346)

    NW_018397274.1Genomic Context describing neighboring genes Neighboring gene beta-amyrin 28-oxidase-like Neighboring gene small nuclear ribonucleoprotein-associated protein B Neighboring gene UDP-arabinose 4-epimerase 1 Neighboring gene protein CHUP1, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018397274 Unplaced Scaffold Reference ASM216827v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coatomer subunit epsilon-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Herrania umbratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM216827v2

    Genomic

    1. NW_018397274.1 Reference ASM216827v2

      Range
      438935..443346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021442394.1 → XP_021298069.1  coatomer subunit epsilon-1

      UniProtKB/TrEMBL
      A0A6J1BIG1
      Conserved Domains (2) summary
      pfam04733
      Location:10 → 294
      Coatomer_E; Coatomer epsilon subunit
      sd00006
      Location:177 → 202
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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