U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    SHPRH SNF2 histone linker PHD RING helicase [ Numida meleagris (helmeted guineafowl) ]

    Gene ID: 110395914, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SHPRH
    Gene description
    SNF2 histone linker PHD RING helicase
    See related
    Ensembl:ENSNMEG00000021497
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Numida meleagris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SHPRH in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    100 current NumMel1.0 (GCF_002078875.1) 3 NC_034411.1 (46944306..46988344, complement)

    Chromosome 3 - NC_034411.1Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 Neighboring gene EPM2A glucan phosphatase, laforin Neighboring gene F-box protein 30 Neighboring gene uncharacterized LOC110395915 Neighboring gene glutamate metabotropic receptor 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_034411.1 Chromosome 3 Reference NumMel1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase SHPRH

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NumMel1.0 Primary Assembly

    Genomic

    1. NC_034411.1 Reference NumMel1.0 Primary Assembly

      Range
      46944306..46988344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021390975.1 → XP_021246650.1  E3 ubiquitin-protein ligase SHPRH isoform X3

      Related
      ENSNMEP00000025392.1, ENSNMET00000036893.1
      Conserved Domains (6) summary
      COG0553
      Location:1201 → 1680
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:670 → 716
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:725 → 997
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:440 → 511
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1438 → 1488
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 392
      SNF2_N; SNF2 family N-terminal domain

    2. XM_021390974.1 → XP_021246649.1  E3 ubiquitin-protein ligase SHPRH isoform X2

      Conserved Domains (6) summary
      COG0553
      Location:1203 → 1682
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:672 → 718
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:727 → 999
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:442 → 513
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1440 → 1490
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 394
      SNF2_N; SNF2 family N-terminal domain

    3. XM_021390978.1 → XP_021246653.1  E3 ubiquitin-protein ligase SHPRH isoform X6

      Conserved Domains (6) summary
      COG0553
      Location:939 → 1418
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:408 → 454
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:463 → 735
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:178 → 249
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1176 → 1226
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:42 → 130
      SNF2_N; SNF2 family N-terminal domain

    4. XM_021390971.1 → XP_021246646.1  E3 ubiquitin-protein ligase SHPRH isoform X1

      Conserved Domains (6) summary
      COG0553
      Location:1207 → 1686
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:676 → 722
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:731 → 1003
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:446 → 517
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1444 → 1494
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 398
      SNF2_N; SNF2 family N-terminal domain

    5. XM_021390970.1 → XP_021246645.1  E3 ubiquitin-protein ligase SHPRH isoform X1

      Conserved Domains (6) summary
      COG0553
      Location:1207 → 1686
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:676 → 722
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:731 → 1003
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:446 → 517
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1444 → 1494
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 398
      SNF2_N; SNF2 family N-terminal domain

    6. XM_021390972.1 → XP_021246647.1  E3 ubiquitin-protein ligase SHPRH isoform X1

      Conserved Domains (6) summary
      COG0553
      Location:1207 → 1686
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:676 → 722
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:731 → 1003
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:446 → 517
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1444 → 1494
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 398
      SNF2_N; SNF2 family N-terminal domain

    7. XM_021390977.1 → XP_021246652.1  E3 ubiquitin-protein ligase SHPRH isoform X5

      Conserved Domains (5) summary
      cd15547
      Location:676 → 722
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:731 → 1003
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:446 → 517
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1444 → 1494
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 398
      SNF2_N; SNF2 family N-terminal domain

    8. XM_021390976.1 → XP_021246651.1  E3 ubiquitin-protein ligase SHPRH isoform X4

      Conserved Domains (5) summary
      cd15547
      Location:676 → 722
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:731 → 1003
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:446 → 517
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:1444 → 1494
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:310 → 398
      SNF2_N; SNF2 family N-terminal domain

    9. XM_021390979.1 → XP_021246654.1  E3 ubiquitin-protein ligase SHPRH isoform X7

      Conserved Domains (4) summary
      cd15547
      Location:676 → 722
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:731 → 1003
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:446 → 517
      Linker_histone; linker histone H1 and H5 family
      cl26465
      Location:310 → 398
      SNF2_N; SNF2 family N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.