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    HBP1 HMG-box transcription factor 1 [ Numida meleagris (helmeted guineafowl) ]

    Gene ID: 110392378, updated on 15-Mar-2024

    Summary

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    Gene symbol
    HBP1
    Gene description
    HMG-box transcription factor 1
    See related
    Ensembl:ENSNMEG00000006117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Numida meleagris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
    Orthologs
    human mouse all
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    Genomic context

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    See HBP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current NumMel1.0 (GCF_002078875.1) 1 NC_034409.1 (14362594..14377424)

    Chromosome 1 - NC_034409.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene uncharacterized LOC110392376 Neighboring gene component of oligomeric golgi complex 5 Neighboring gene uncharacterized LOC110392382 Neighboring gene G protein-coupled receptor 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034409.1 Chromosome 1 Reference NumMel1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HMG box-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NumMel1.0 Primary Assembly

    Genomic

    1. NC_034409.1 Reference NumMel1.0 Primary Assembly

      Range
      14362594..14377424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021384588.1 → XP_021240263.1  HMG box-containing protein 1 isoform X1

      Related
      ENSNMEP00000005941.1, ENSNMET00000010060.1
      Conserved Domains (2) summary
      cd01388
      Location:449 → 520
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:227 → 351
      AXH; Ataxin-1 and HBP1 module (AXH)

    2. XM_021384589.1 → XP_021240264.1  HMG box-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd01388
      Location:444 → 515
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:227 → 346
      AXH; Ataxin-1 and HBP1 module (AXH)

    3. XM_021384591.1 → XP_021240266.1  HMG box-containing protein 1 isoform X3

      Conserved Domains (2) summary
      cd01388
      Location:436 → 507
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:214 → 338
      AXH; Ataxin-1 and HBP1 module (AXH)

    4. XM_021384590.1 → XP_021240265.1  HMG box-containing protein 1 isoform X3

      Conserved Domains (2) summary
      cd01388
      Location:436 → 507
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:214 → 338
      AXH; Ataxin-1 and HBP1 module (AXH)
    Nucleotide Protein
    Heading Accession and Version

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