LY49 killer cell lectin-like receptor subfamily A, member 1 [Sus scrofa (pig)] - Gene

Summary

Gene symbol: LY49
Gene description: killer cell lectin-like receptor subfamily A, member 1
See related: Ensembl:ENSSSCG00000000636
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: KLRA1
Expression: Broad expression in spleen (RPKM 1.9), lung (RPKM 0.6) and 5 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	5	NC_010447.5 (61439354..61457948)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	5	NC_010447.4 (64164030..64183832)

Chromosome 5 - NC_010447.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: killer cell lectin-like receptor subfamily A, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_214338.1 → NP_999503.1 killer cell lectin-like receptor subfamily A, member 1

See identical proteins and their annotated locations for NP_999503.1

Status: PROVISIONAL

Source sequence(s)

AY191819

UniProtKB/TrEMBL

A0A480RTW0, A0A4X1UZU5, A0A8D1DSP7, A0A8D1SKQ0, Q863K2

Related

ENSSSCP00000074134.1, ENSSSCT00000071176.2

Conserved Domains (2) summary

cd03593
Location:140 → 256

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

pfam08391
Location:41 → 153

Ly49; Ly49-like protein, N-terminal region

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010447.5 Reference Sscrofa11.1 Primary Assembly

Range

61439354..61457948

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021091173.1 → XP_020946832.1 killer cell lectin-like receptor subfamily A, member 1 isoform X1

UniProtKB/TrEMBL

A0A5G2RA01

Conserved Domains (2) summary

cd03593
Location:140 → 216

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

pfam08391
Location:41 → 153

Ly49; Ly49-like protein, N-terminal region