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    zf(phd)-26 zinc finger protein [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778876, updated on 18-Aug-2023

    Summary

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    Gene symbol
    zf(phd)-26
    Gene description
    zinc finger protein
    See related
    Ensembl:ENSCING00000017065
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See zf(phd)-26 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 11 NC_020176.2 (533654..537037)

    Chromosome 11 - NC_020176.2Genomic Context describing neighboring genes Neighboring gene mucosa-associated lymphoid tissue lymphoma translocation protein 1-like Neighboring gene RNA polymerase II elongation factor ELL Neighboring gene uncharacterized LOC100177258 Neighboring gene coiled-coil domain-containing protein 60-like Neighboring gene uncharacterized LOC113474709 Neighboring gene DNA repair protein RAD51 homolog 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020176.2 Chromosome 11 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883
    2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078452.1 → NP_001071920.1  zinc finger protein

      See identical proteins and their annotated locations for NP_001071920.1

      Status: PROVISIONAL

      Source sequence(s)
      AK222433
      UniProtKB/TrEMBL
      A0A1W2VPD3, F6X1Z3, Q1RPX0
      Related
      ENSCINP00000029150, ENSCINT00000029396
      Conserved Domains (4) summary
      cd09583
      Location:177 → 245
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
      smart00454
      Location:179 → 241
      SAM; Sterile alpha motif
      cd15526
      Location:17 → 71
      PHD1_MOZ_d4; PHD finger 1 found in monocytic leukemia zinc-finger protein (MOZ), its factor (MORF), and d4 gene family proteins
      cl22851
      Location:73 → 120
      PHD_SF; PHD finger superfamily

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020176.2 Reference KH Primary Assembly

      Range
      533654..537037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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