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    LOC18443491 histone acetyltransferase type B catalytic subunit [ Amborella trichopoda ]

    Gene ID: 18443491, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC18443491
    Gene description
    histone acetyltransferase type B catalytic subunit
    Locus tag
    AMTR_s00056p00180570
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18443491 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499905.1 (3019812..3034596)

    NW_006499905.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105421364 Neighboring gene acid phosphatase 1 Neighboring gene mitochondrial-processing peptidase subunit alpha Neighboring gene deSI-like protein At4g17486

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006499905.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H4 acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in subtelomeric heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone acetyltransferase type B catalytic subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006499905.1 Reference AMTR1.0 Primary Assembly

      Range
      3019812..3034596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020673134.1 → XP_020528793.1  histone acetyltransferase type B catalytic subunit isoform X1

      UniProtKB/TrEMBL
      U5CYG9
      Conserved Domains (2) summary
      cd04301
      Location:232 → 290
      NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
      pfam10394
      Location:27 → 201
      Hat1_N; Histone acetyl transferase HAT1 N-terminus

    2. XM_020673135.1 → XP_020528794.1  histone acetyltransferase type B catalytic subunit isoform X3

      UniProtKB/TrEMBL
      U5CYG9
      Conserved Domains (2) summary
      cd04301
      Location:231 → 289
      NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
      pfam10394
      Location:27 → 200
      Hat1_N; Histone acetyl transferase HAT1 N-terminus

    3. XM_011628468.2 → XP_011626770.1  histone acetyltransferase type B catalytic subunit isoform X2

      UniProtKB/TrEMBL
      U5CYG9
      Conserved Domains (2) summary
      cd04301
      Location:231 → 289
      NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
      pfam10394
      Location:28 → 200
      Hat1_N; Histone acetyl transferase HAT1 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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