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    nr1i2 nuclear receptor subfamily 1, group I, member 2 [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109869793, updated on 14-Mar-2024

    Summary

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    Gene symbol
    nr1i2
    Gene description
    nuclear receptor subfamily 1, group I, member 2
    See related
    Ensembl:ENSOKIG00005028060
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    human zebrafish all
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    Genomic context

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    See nr1i2 in Genome Data Viewer
    Location:
    chromosome: LG2
    Exon count:
    9
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG2 NC_034175.2 (62430061..62450440, complement)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG2 NC_034175.1 (61783538..61803600, complement)

    Linkage Group LG2 - NC_034175.2Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor 156 Neighboring gene glycogen synthase kinase-3 beta Neighboring gene CD200 receptor 1 Neighboring gene B and T lymphocyte associated

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor subfamily 1 group I member 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034175.2 Reference Okis_V2 Primary Assembly

      Range
      62430061..62450440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020460052.2 → XP_020315641.1  nuclear receptor subfamily 1 group I member 2-like

      UniProtKB/TrEMBL
      A0A8C7I3Q7
      Related
      ENSOKIP00005065326.1, ENSOKIT00005069442.1
      Conserved Domains (2) summary
      cd06934
      Location:126 → 448
      NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
      cd07162
      Location:30 → 116
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers

    2. XM_020460059.2 → XP_020315648.1  nuclear receptor subfamily 1 group I member 2-like

      UniProtKB/TrEMBL
      A0A8C7I3Q7
      Conserved Domains (2) summary
      cd06934
      Location:126 → 448
      NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
      cd07162
      Location:30 → 116
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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