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    LOC109781343 polyubiquitin [ Aegilops tauschii ]

    Gene ID: 109781343, updated on 18-Nov-2024

    Summary

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    Gene symbol
    LOC109781343
    Gene description
    polyubiquitin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aegilops tauschii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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    Genomic context

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    See LOC109781343 in Genome Data Viewer
    Location:
    chromosome: 6D
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Aet v5.0 (GCF_002575655.2) 6D NC_053040.2 (113483995..113486634, complement)
    101 previous assembly Aet v4.0 (GCF_002575655.1) 6D NC_053040.1 (113552817..113555470, complement)

    Chromosome 6D - NC_053040.2Genomic Context describing neighboring genes Neighboring gene peroxidase 3 Neighboring gene polyubiquitin 11 Neighboring gene polyubiquitin 11 Neighboring gene polyubiquitin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyubiquitin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aet v5.0 Primary Assembly

    Genomic

    1. NC_053040.2 Reference Aet v5.0 Primary Assembly

      Range
      113483995..113486634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020339944.3 → XP_020195533.1  polyubiquitin

      UniProtKB/TrEMBL
      A0A453JVN1, A0A453NBQ5
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    Nucleotide Protein
    Heading Accession and Version

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