U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    h2az2b H2A.Z variant histone 2b [ Danio rerio (zebrafish) ]

    Gene ID: 403077, updated on 9-Dec-2024

    Summary

    Official Symbol
    h2az2bprovided by ZNC
    Official Full Name
    H2A.Z variant histone 2bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050506-24
    See related
    Ensembl:ENSDARG00000116491 AllianceGenome:ZFIN:ZDB-GENE-050506-24
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    h2av; h2afvb; h2afvl; h2afza; im:6896397
    Summary
    Predicted to be a structural constituent of chromatin. Acts upstream of or within epigenetic programming of gene expression. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to several human genes including H2AZ1 (H2A.Z variant histone 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See h2az2b in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (44984876..44994920)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (45139809..45147976)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene interleukin 1, beta Neighboring gene purine-rich element binding protein Bb Neighboring gene ventrally expressed dharma/bozozok antagonist Neighboring gene polymerase (DNA directed), mu

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    part_of nucleosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    H2A.Z variant histone 2b
    Names
    H2A histone family, member V, like
    H2A histone family, member Vb
    histone 2A family member ZA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001043323.2NP_001036788.1  H2A.Z variant histone 2b

      See identical proteins and their annotated locations for NP_001036788.1

      Status: VALIDATED

      Source sequence(s)
      CU633882, CU695198
      UniProtKB/TrEMBL
      A0A8M1N9C1, A0A8M2BCB5, Q0Z946
      Related
      ENSDARP00000154835.1, ENSDART00000182520.1
      Conserved Domains (1) summary
      PLN00154
      Location:6121
      PLN00154; histone H2A; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      44984876..44994920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)