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    PGK1 phosphoglycerate kinase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820461, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGK1
    Official Full Name
    phosphoglycerate kinase 1
    Primary source
    TAIR:AT3G12780
    Locus tag
    AT3G12780
    See related
    Araport:AT3G12780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    phosphoglycerate kinase 1
    Summary
    nuclear phosphoglycerate kinase (PGK1)
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    Genomic context

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    See PGK1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (4060920..4063306, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ALA-interacting subunit 1 Neighboring gene zinc transporter 1 precursor Neighboring gene defective in cullin neddylation protein Neighboring gene mitochondrial editing factor 22 Neighboring gene ubiquitin-conjugating enzyme family protein Neighboring gene short-chain dehydrogenase-reductase B Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein Neighboring gene myb domain protein 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pooled CRISPR/Cas9 reveals redundant roles of plastidial phosphoglycerate kinases in carbon fixation and metabolism. Li R, et al. Plant J, 2019 Jun. PMID 30834637
    2. Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth. Rosa-Téllez S, et al. Plant Physiol, 2018 Feb. PMID 28951489, Free PMC Article
    3. In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana. Gargano D, et al. Biochem J, 2012 Sep 15. PMID 22823492
    4. The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature. Goulas E, et al. Plant J, 2006 Sep. PMID 16923014
    5. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PGK1 role in metabolism and growth.
      Title: Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth.
    2. PGK1 (phosphoglycerate kinase 1) interacts with AtFtsZ2 in planta, suggesting a possible role in FtsZ phosphorylation.
      Title: In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112114.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphoglycerate kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within galactolipid biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in reductive pentose-phosphate cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within reductive pentose-phosphate cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within thylakoid membrane organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in cytoplasm HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in stromule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    phosphoglycerate kinase 1
    NP_187884.1
    • phosphoglycerate kinase 1 (PGK1); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, response to cold, glycolysis, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10843 Blast hits to 10817 proteins in 3010 species: Archae - 254; Bacteria - 5217; Metazoa - 451; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4213 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4060920..4063306 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112114.4 → NP_187884.1  phosphoglycerate kinase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187884.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LD57
      UniProtKB/TrEMBL
      A0A178V5M8, A0A5S9XBJ1
      Conserved Domains (1) summary
      PLN03034
      Location:1 → 481
      PLN03034; phosphoglycerate kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LD57.1

    Gene LinkOut

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