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    PSD2 phosphatidylserine decarboxylase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835825, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSD2
    Official Full Name
    phosphatidylserine decarboxylase 2
    Primary source
    TAIR:AT5G57190
    Locus tag
    AT5G57190
    See related
    Araport:AT5G57190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUL3.14; MUL3_14; phosphatidylserine decarboxylase 2; PHOSPHATIDYLSERINE DECARBOXYLASE 2
    Summary
    Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.
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    Genomic context

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    See PSD2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    21
    Sequence:
    Chromosome: 5; NC_003076.8 (23171049..23175495, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tautomerase/MIF superfamily protein Neighboring gene chloroplast import apparatus 2 Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene cytochrome P450, family 81, subfamily F, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria. Nerlich A, et al. Plant Physiol, 2007 Jun. PMID 17449644, Free PMC Article
    2. Plants synthesize ethanolamine by direct decarboxylation of serine using a pyridoxal phosphate enzyme. Rontein D, et al. J Biol Chem, 2001 Sep 21. PMID 11461929
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001345247.1
    NM_125101.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylserine decarboxylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylserine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylserine decarboxylase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylethanolamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylserine decarboxylase 2
    NP_200529.4
    • phosphatidylserine decarboxylase 2 (PSD2); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Calcium-binding EF-hand (InterPro:IPR002048), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 3 (TAIR:AT4G25970.1); Has 3739 Blast hits to 3658 proteins in 1335 species: Archae - 3; Bacteria - 2361; Metazoa - 260; Fungi - 489; Plants - 195; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23171049..23175495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125101.5 → NP_200529.4  phosphatidylserine decarboxylase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200529.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4GNA9, F4KAK5, Q9LU67
      UniProtKB/TrEMBL
      A0A178UED8, A0A5S9YEY5
      Conserved Domains (1) summary
      PLN02964
      Location:1 → 634
      PLN02964; phosphatidylserine decarboxylase

    2. NM_001345247.1 → NP_001330975.1  phosphatidylserine decarboxylase 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCF8, A0A5S9YEY5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KAK5.1

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