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    FAR1 FRS (FAR1 Related Sequences) transcription factor family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827173, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FAR1
    Official Full Name
    FRS (FAR1 Related Sequences) transcription factor family
    Primary source
    TAIR:AT4G15090
    Locus tag
    AT4G15090
    See related
    Araport:AT4G15090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3590W; FAR-RED IMPAIRED RESPONSE 1; FCAALL.134
    Summary
    Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.
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    Genomic context

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    See FAR1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (8614060..8618173)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FBD-like domain family protein Neighboring gene DHHC-type zinc finger family protein Neighboring gene catalytic LigB subunit of aromatic ring-opening dioxygenase family Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Hudson M, et al. Genes Dev, 1999 Aug 1. PMID 10444599, Free PMC Article
    2. FAR-RED ELONGATED HYPOCOTYL3 and FAR-RED IMPAIRED RESPONSE1 transcription factors integrate light and abscisic acid signaling in Arabidopsis. Tang W, et al. Plant Physiol, 2013 Oct. PMID 23946351, Free PMC Article
    3. Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1. Wang H, et al. EMBO J, 2002 Mar 15. PMID 11889039, Free PMC Article
    4. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Lin R, et al. Science, 2007 Nov 23. PMID 18033885, Free PMC Article
    5. Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction. Lin R, et al. Plant Physiol, 2008 Oct. PMID 18715961, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis FAR-RED ELONGATED HYPOCOTYL3 negatively regulates carbon starvation responses.
      Title: Arabidopsis FAR-RED ELONGATED HYPOCOTYL3 negatively regulates carbon starvation responses.
    2. Transcription Factors FHY3 and FAR1 Regulate Light-Induced CIRCADIAN CLOCK ASSOCIATED1 Gene Expression in Arabidopsis.
      Title: Transcription Factors FHY3 and FAR1 Regulate Light-Induced CIRCADIAN CLOCK ASSOCIATED1 Gene Expression in Arabidopsis.
    3. FHY3 and FAR1 Integrate Light Signals with the miR156-SPL Module-Mediated Aging Pathway to Regulate Arabidopsis Flowering.
      Title: FHY3 and FAR1 Integrate Light Signals with the miR156-SPL Module-Mediated Aging Pathway to Regulate Arabidopsis Flowering.
    4. the light-signaling proteins FHY3 and FAR1 influence starch synthesis and starch granule formation through transcriptional activation of ISA2.
      Title: Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    5. FHY3 and FAR1 directly bind the promoter of MIPS1 to activate its expression and thereby promote inositol biosynthesis to prevent
      Title: Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    6. this study demonstrates an important role of FHY3 and FAR1 in regulating plant immunity, through integrating chlorophyll biosynthesis and the salicylic acid signaling pathway.
      Title: A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    7. domestication of FHY3/FAR1 may enable angiosperms to better integrate various endogenous and exogenous signals for coordinated regulation of growth and development, thus enhancing their fitness and adaptation
      Title: Multifaceted roles of FHY3 and FAR1 in light signaling and beyond.
    8. FHY3 and FAR1 are positive regulators of abscissic acid (ABA) signaling and provide insight into the integration of light and ABA signaling.
      Title: FAR-RED ELONGATED HYPOCOTYL3 and FAR-RED IMPAIRED RESPONSE1 transcription factors integrate light and abscisic acid signaling in Arabidopsis.
    9. Transposase-derived proteins FHY3/FAR1 interact with PHYTOCHROME-INTERACTING FACTOR1 to regulate chlorophyll biosynthesis by modulating HEMB1 during deetiolation in Arabidopsis.
      Title: Transposase-derived proteins FHY3/FAR1 interact with PHYTOCHROME-INTERACTING FACTOR1 to regulate chlorophyll biosynthesis by modulating HEMB1 during deetiolation in Arabidopsis.
    10. study shows FHY3 & FAR1, which encode proteins related to Mutator-like transposases, act together to modulate phyA signaling by activating transcription of FHY1 & FHL
      Title: Transposase-derived transcription factors regulate light signaling in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340993.1
    NM_001340994.1
    NM_001340995.1
    NM_117596.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within far-red light signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within red or far-red light signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to far red light IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to red or far red light IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FRS (FAR1 Related Sequences) transcription factor family
    NP_567455.4
    • FAR-RED IMPAIRED RESPONSE 1 (FAR1); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1639 Blast hits to 1460 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 107; Plants - 1519; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8614060..8618173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340992.1 → NP_001329445.1  FRS (FAR1 Related Sequences) transcription factor family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SWG3
      UniProtKB/TrEMBL
      A0A178UY59, A0A5S9XSI5

    2. NM_117596.6 → NP_567455.4  FRS (FAR1 Related Sequences) transcription factor family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567455.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SWG3
      UniProtKB/TrEMBL
      A0A178UY59, A0A5S9XSI5
      Conserved Domains (4) summary
      smart00575
      Location:567 → 592
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:10 → 826
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:66 → 154
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:280 → 371
      MULE; MULE transposase domain

    3. NM_001340993.1 → NP_001329446.1  FRS (FAR1 Related Sequences) transcription factor family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SWG3
      UniProtKB/TrEMBL
      A0A178UY59, A0A5S9XSI5

    4. NM_001340994.1 → NP_001329443.1  FRS (FAR1 Related Sequences) transcription factor family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SWG3
      UniProtKB/TrEMBL
      A0A178UY59, A0A5S9XSI5

    5. NM_001340995.1 → NP_001329444.1  FRS (FAR1 Related Sequences) transcription factor family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SWG3
      UniProtKB/TrEMBL
      A0A178UY59, A0A5S9XSI5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SWG3.1

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