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    TMPIT-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826635, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TMPIT-like protein
    Primary source
    TAIR:AT4G10430
    Locus tag
    AT4G10430
    See related
    Araport:AT4G10430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7L13.10; F7L13_10
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (6454703..6458146, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Ribosomal protein L6 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340664.1
    NM_001340665.1
    NM_001340666.1
    NM_001340667.1
    NM_001340668.1
    NM_001340669.1
    NM_117111.5
    NM_202799.2
    NM_202800.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TMPIT-like protein
    NP_567356.1
    • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974528.2
    • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 243 Blast hits to 243 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_974529.1
    • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6454703..6458146 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202800.1 → NP_974529.1  TMPIT-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974529.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EX19, Q93XX0
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 334
      TMPIT; TMPIT-like protein

    2. NM_117111.5 → NP_567356.1  TMPIT-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567356.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EX19, Q93XX0
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 334
      TMPIT; TMPIT-like protein

    3. NM_001340666.1 → NP_001328461.1  TMPIT-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R3, C0Z2M2
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 288
      TMPIT; TMPIT-like protein

    4. NM_001340664.1 → NP_001328459.1  TMPIT-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R3, C0Z2M2
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 288
      TMPIT; TMPIT-like protein

    5. NM_001340665.1 → NP_001328458.1  TMPIT-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R3, C0Z2M2
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 288
      TMPIT; TMPIT-like protein

    6. NM_001340667.1 → NP_001328460.1  TMPIT-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4Q6, C0Z2M2
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 283
      TMPIT; TMPIT-like protein

    7. NM_202799.2 → NP_974528.2  TMPIT-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974528.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JLP0
      Conserved Domains (1) summary
      pfam07851
      Location:6 → 207
      TMPIT; TMPIT-like protein

    8. NM_001340668.1 → NP_001328463.1  TMPIT-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R5

    9. NM_001340669.1 → NP_001328462.1  TMPIT-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R3, C0Z2M2
      Conserved Domains (1) summary
      pfam07851
      Location:36 → 288
      TMPIT; TMPIT-like protein
    Nucleotide Protein
    Heading Accession and Version

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