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    SK20 SKP1-like 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819203, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK20
    Official Full Name
    SKP1-like 20
    Primary source
    TAIR:AT2G45950
    Locus tag
    AT2G45950
    See related
    Araport:AT2G45950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK20; F4I18.7; SKP1-like 20
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    Genomic context

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    See SK20 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (18904324..18908121, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene hypothetical protein (DUF295) Neighboring gene plasma membrane intrinsic protein 1B Neighboring gene cytochrome P450, family 86, subfamily A, polypeptide 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
    2. Identification of ASK and clock-associated proteins as molecular partners of LKP2 (LOV kelch protein 2) in Arabidopsis. Yasuhara M, et al. J Exp Bot, 2004 Sep. PMID 15310821
    3. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084596.2
    NM_001337163.1
    NM_001337164.1
    NM_001337165.1
    NM_130158.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 20
    NP_001078065.1
    • SKP1-like 20 (SK20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1); Has 1496 Blast hits to 1480 proteins in 265 species: Archae - 0; Bacteria - 13; Metazoa - 562; Fungi - 181; Plants - 479; Viruses - 9; Other Eukaryotes - 252 (source: NCBI BLink).
    NP_566058.2
    • SKP1-like 20 (SK20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18904324..18908121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130158.4 → NP_566058.2  SKP1-like 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566058.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTC9
      Conserved Domains (2) summary
      smart00512
      Location:15 → 116
      Skp1; Found in Skp1 protein family
      pfam01466
      Location:90 → 153
      Skp1; Skp1 family, dimerization domain

    2. NM_001084596.2 → NP_001078065.1  SKP1-like 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078065.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQG7, B3H4L0, O80824, Q94K04
      UniProtKB/TrEMBL
      A0A178VTC9
      Conserved Domains (2) summary
      smart00512
      Location:15 → 116
      Skp1; Found in Skp1 protein family
      pfam01466
      Location:90 → 153
      Skp1; Skp1 family, dimerization domain

    3. NM_001337163.1 → NP_001325355.1  SKP1-like 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTC9

    4. NM_001337164.1 → NP_001325353.1  SKP1-like 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTC9

    5. NM_001337165.1 → NP_001325354.1  SKP1-like 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQG7, B3H4L0, O80824, Q94K04
      UniProtKB/TrEMBL
      A0A178VTC9
      Conserved Domains (2) summary
      smart00512
      Location:15 → 116
      Skp1; Found in Skp1 protein family
      pfam01466
      Location:90 → 153
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MQG7.1

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