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    FRS2 FAR1-related sequence 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817785, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS2
    Official Full Name
    FAR1-related sequence 2
    Primary source
    TAIR:AT2G32250
    Locus tag
    AT2G32250
    See related
    Araport:AT2G32250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FAR1-related sequence 2; T32F6.23; T32F6_23
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    Genomic context

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    See FRS2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (13693094..13697206)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene early endosome antigen Neighboring gene phosphorylcholine cytidylyltransferase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084522.2
    NM_001124959.2
    NM_001336379.1
    NM_001336380.1
    NM_001336381.1
    NM_001336382.1
    NM_128784.4
    NM_201851.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAR1-related sequence 2
    NP_001077991.1
    • FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1417 Blast hits to 1282 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 75; Plants - 1337; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_001118431.1
    • FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_180784.2
    • FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973580.1
    • FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13693094..13697206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124959.2 → NP_001118431.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118431.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EY36
      Conserved Domains (4) summary
      PLN03097
      Location:40 → 797
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:499 → 535
      SWIM; SWIM zinc finger
      pfam03101
      Location:53 → 138
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:228 → 315
      MULE; MULE transposase domain

    2. NM_128784.4 → NP_180784.2  FAR1-related sequence 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180784.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQG7, Q3EBQ3, Q56Y20, Q9ZV55
      UniProtKB/TrEMBL
      A0A654EY36
      Conserved Domains (4) summary
      PLN03097
      Location:40 → 799
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:499 → 535
      SWIM; SWIM zinc finger
      pfam03101
      Location:53 → 138
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:228 → 315
      MULE; MULE transposase domain

    3. NM_001336380.1 → NP_001324564.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQG7, Q3EBQ3, Q56Y20, Q9ZV55
      UniProtKB/TrEMBL
      A0A654EY36

    4. NM_001084522.2 → NP_001077991.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077991.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQG7, Q3EBQ3, Q56Y20, Q9ZV55
      UniProtKB/TrEMBL
      A0A654EY36
      Conserved Domains (4) summary
      PLN03097
      Location:40 → 799
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:499 → 535
      SWIM; SWIM zinc finger
      pfam03101
      Location:53 → 138
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:228 → 315
      MULE; MULE transposase domain

    5. NM_001336379.1 → NP_001324563.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0H6, A0A654EY36

    6. NM_001336381.1 → NP_001324561.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0K4, A0A654EY36

    7. NM_001336382.1 → NP_001324562.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0I3, A0A654EY36

    8. NM_201851.2 → NP_973580.1  FAR1-related sequence 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973580.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EY36
      Conserved Domains (4) summary
      PLN03097
      Location:40 → 797
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:499 → 535
      SWIM; SWIM zinc finger
      pfam03101
      Location:53 → 138
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:228 → 315
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EBQ3.1

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