U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    BGAL8 beta-galactosidase 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817395, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BGAL8
    Official Full Name
    beta-galactosidase 8
    Primary source
    TAIR:AT2G28470
    Locus tag
    AT2G28470
    See related
    Araport:AT2G28470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    beta-galactosidase 8; T17D12.3; T17D12_3
    Summary
    putative beta-galactosidase (BGAL8 gene)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BGAL8 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Sequence:
    Chromosome: 2; NC_003071.7 (12168840..12173991, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proline-rich family protein Neighboring gene zinc finger (CCCH-type) family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein Neighboring gene RmlC-like cupins superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001202695.2
    NM_001336165.1
    NM_001336166.1
    NM_001336167.1
    NM_179790.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    beta-galactosidase 8
    NP_001189624.1
    • beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1).
    NP_850121.1
    • beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1); Has 2800 Blast hits to 2372 proteins in 478 species: Archae - 15; Bacteria - 1080; Metazoa - 760; Fungi - 211; Plants - 631; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12168840..12173991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179790.3 → NP_850121.1  beta-galactosidase 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850121.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96257, Q9SCV4, Q9SK11
      UniProtKB/TrEMBL
      A0A654F220
      Conserved Domains (4) summary
      PLN03059
      Location:30 → 852
      PLN03059; beta-galactosidase; Provisional
      pfam01301
      Location:38 → 342
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam02140
      Location:774 → 851
      Gal_Lectin; Galactose binding lectin domain
      pfam13364
      Location:629 → 665
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    2. NM_001202695.2 → NP_001189624.1  beta-galactosidase 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189624.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F220, F4IIQ3
      Conserved Domains (4) summary
      PLN03059
      Location:24 → 846
      PLN03059; beta-galactosidase; Provisional
      pfam01301
      Location:32 → 336
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam02140
      Location:768 → 845
      Gal_Lectin; Galactose binding lectin domain
      pfam13364
      Location:623 → 659
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    3. NM_001336165.1 → NP_001324192.1  beta-galactosidase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96257, Q9SCV4, Q9SK11
      UniProtKB/TrEMBL
      A0A654F220

    4. NM_001336166.1 → NP_001324193.1  beta-galactosidase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F220, F4IIQ3

    5. NM_001336167.1 → NP_001324194.1  beta-galactosidase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZB4, A0A654F220
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCV4.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.