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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817161, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT2G26210
    Locus tag
    AT2G26210
    See related
    Araport:AT2G26210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1D16.15; T1D16_15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (11157118..11159417)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene calmodulin-binding family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084492.2
    NM_001336043.1
    NM_001336044.1
    NM_001336045.1
    NM_001336046.1
    NM_001336047.1
    NM_179745.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_001077961.1
    • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 8306 Blast hits to 5752 proteins in 510 species: Archae - 43; Bacteria - 849; Metazoa - 2690; Fungi - 383; Plants - 471; Viruses - 37; Other Eukaryotes - 3833 (source: NCBI BLink).
    NP_001318289.1
    • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110).
    NP_850076.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 8313 Blast hits to 5755 proteins in 512 species: Archae - 43; Bacteria - 849; Metazoa - 2693; Fungi - 398; Plants - 471; Viruses - 37; Other Eukaryotes - 3822 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11157118..11159417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179745.3 → NP_850076.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850076.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSW6, A0A5S9X1B9, Q8VZ34
      Conserved Domains (3) summary
      cd00204
      Location:106 → 175
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13857
      Location:121 → 175
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:106 → 132
      ANK; ANK repeat [structural motif]

    2. NM_001084492.2 → NP_001077961.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077961.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUI5, A8MR72
      Conserved Domains (3) summary
      cd00204
      Location:83 → 152
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13857
      Location:98 → 152
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:83 → 109
      ANK; ANK repeat [structural motif]

    3. NM_001336044.1 → NP_001323604.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSW6, A0A5S9X1B9, Q8VZ34

    4. NM_001336046.1 → NP_001323602.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSW6, A0A5S9X1B9, Q8VZ34

    5. NM_001336045.1 → NP_001323605.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSW6, A0A5S9X1B9, Q8VZ34

    6. NM_001336047.1 → NP_001323603.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSW6, A0A5S9X1B9, Q8VZ34

    7. NM_001336043.1 → NP_001318289.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUI5, A8MR72
      Conserved Domains (3) summary
      cd00204
      Location:83 → 152
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13857
      Location:98 → 152
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:83 → 109
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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