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    DNAse I-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840040, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNAse I-like superfamily protein
    Primary source
    TAIR:AT1G31500
    Locus tag
    AT1G31500
    See related
    Araport:AT1G31500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27M3.27; F27M3_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (11273573..11276636, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene shoot gravitropism 2 (SGR2) Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene ncRNA Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtHESPERIN: a novel regulator of circadian rhythms with poly(A)-degrading activity in plants. Delis C, et al. RNA Biol, 2016. PMID 26619288, Free PMC Article
    2. Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. Arae T, et al. Plant Cell Physiol, 2019 Sep 1. PMID 31093672
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001084171.2
    NM_001332965.1
    NM_001332966.1
    NM_001332967.1
    NM_102889.5
    NM_202214.3
    NM_202215.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within nuclear-transcribed mRNA poly(A) tail shortening IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNAse I-like superfamily protein
    NP_001077640.1
    • DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G31530.1); Has 1261 Blast hits to 1240 proteins in 208 species: Archae - 0; Bacteria - 12; Metazoa - 523; Fungi - 244; Plants - 247; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).
    NP_174435.2
    • DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G31530.1); Has 1260 Blast hits to 1239 proteins in 211 species: Archae - 0; Bacteria - 12; Metazoa - 524; Fungi - 260; Plants - 247; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    NP_973943.2
    • DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G31530.1); Has 1284 Blast hits to 1263 proteins in 215 species: Archae - 0; Bacteria - 12; Metazoa - 523; Fungi - 267; Plants - 247; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).
    NP_973944.1
    • DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G31530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11273573..11276636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332964.1 → NP_001323327.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WH49, A0A654EFA6
      Conserved Domains (1) summary
      cl00490
      Location:62 → 380
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. NM_202215.3 → NP_973944.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973944.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFJ9
      Conserved Domains (1) summary
      cl00490
      Location:62 → 283
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. NM_102889.5 → NP_174435.2  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174435.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDN6
      Conserved Domains (1) summary
      cl00490
      Location:67 → 385
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    4. NM_001084171.2 → NP_001077640.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077640.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MS41, Q304C9, Q3ED42, Q3ED43, Q84JM1, Q9C559
      UniProtKB/TrEMBL
      A0A5S9WH49
      Conserved Domains (1) summary
      cl00490
      Location:96 → 414
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    5. NM_001332965.1 → NP_001323329.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFJ9, A0A1P8AWP9

    6. NM_001332966.1 → NP_001323328.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDN6, A0A1P8AWP4

    7. NM_202214.3 → NP_973943.2  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973943.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DZD4
      Conserved Domains (1) summary
      cl00490
      Location:37 → 355
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    8. NM_001332967.1 → NP_001323330.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFJ9, A0A1P8AWT0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MS41.1

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