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    Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838464, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transducin/WD40 repeat-like superfamily protein
    Primary source
    TAIR:AT1G18830
    Locus tag
    AT1G18830
    See related
    Araport:AT1G18830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6A14.8; F6A14_8; SEC31A
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    21
    Sequence:
    Chromosome: 1; NC_003070.9 (6489233..6494634)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phytochrome kinase substrate-like protein Neighboring gene tRNA-Leu Neighboring gene mini zinc finger Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis. Liu X, et al. Plant J, 2021 Mar. PMID 33340171
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
      Title: COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101740.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transducin/WD40 repeat-like superfamily protein
    NP_173317.2
    • Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G63460.1); Has 13982 Blast hits to 10894 proteins in 455 species: Archae - 16; Bacteria - 1751; Metazoa - 4952; Fungi - 3516; Plants - 1949; Viruses - 0; Other Eukaryotes - 1798 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6489233..6494634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332373.1 → NP_001320897.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP97, A0A5S9V1Q4, A0A654EB71
      Conserved Domains (4) summary
      PRK10263
      Location:713 → 861
      PRK10263; DNA translocase FtsK; Provisional
      sd00039
      Location:10 → 62
      7WD40; WD40 repeat [structural motif]
      cl14807
      Location:489 → 710
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      cl29593
      Location:13 → 324
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_001332374.1 → NP_001320898.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP97, A0A5S9V1Q4, A0A654EB71
      Conserved Domains (4) summary
      PRK10263
      Location:713 → 861
      PRK10263; DNA translocase FtsK; Provisional
      sd00039
      Location:10 → 62
      7WD40; WD40 repeat [structural motif]
      cl14807
      Location:489 → 710
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      cl29593
      Location:13 → 324
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_101740.3 → NP_173317.2  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173317.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ICD9, Q9M9V2
      UniProtKB/TrEMBL
      A0A7G2DWE7
      Conserved Domains (4) summary
      COG2319
      Location:32 → 326
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:10 → 62
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:81 → 326
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:495 → 716
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4ICD9.1

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