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    mediator of RNA polymerase II transcription subunit 15a-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838148, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of RNA polymerase II transcription subunit 15a-like protein
    Primary source
    TAIR:AT1G15790
    Locus tag
    AT1G15790
    See related
    Araport:AT1G15790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H2.13; F7H2_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (5438171..5440131, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene mediator of RNA polymerase II transcription subunit 15a-like protein Neighboring gene uncharacterized protein Neighboring gene S15/NS1, RNA-binding protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332186.1
    NM_001332187.1
    NM_101447.4
    NM_202108.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 15a-like protein
    NP_173031.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973837.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5438171..5440131 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332185.1 → NP_001322877.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV92, A0A7G2DT44
      Conserved Domains (1) summary
      pfam16987
      Location:4 → 85
      KIX_2; KIX domain

    2. NM_101447.4 → NP_173031.2  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173031.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAT4, A0A384K8Y6, A0A7G2DT44, Q9LMQ5
      Conserved Domains (1) summary
      pfam16987
      Location:4 → 85
      KIX_2; KIX domain

    3. NM_202108.3 → NP_973837.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973837.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAT4, A0A384K8Y6, A0A7G2DT44, Q9LMQ5
      Conserved Domains (1) summary
      pfam16987
      Location:4 → 85
      KIX_2; KIX domain

    4. NM_001332186.1 → NP_001322875.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAT4, A0A384K8Y6, A0A7G2DT44, Q9LMQ5
      Conserved Domains (1) summary
      pfam16987
      Location:4 → 85
      KIX_2; KIX domain

    5. NM_001332187.1 → NP_001322876.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVD7, A0A5S9ULV2
    Nucleotide Protein
    Heading Accession and Version

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