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    tra2b.S transformer 2 beta homolog S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398448, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tra2b.S
    Official Full Name
    transformer 2 beta homolog S homeolog
    Primary source
    Xenbase:XB-GENE-17332898
    Locus tag
    XELAEV_18047427mg
    See related
    EnsemblRapid:ENSXLAG00005017211 AllianceGenome:Xenbase:XB-GENE-17332898
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tra2b; sfrs10
    Summary
    Predicted to enable RNA binding activity. Predicted to act upstream of or within positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Orthologous to human TRA2B (transformer 2 beta homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See tra2b.S in Genome Data Viewer
    Location:
    chromosome: 9_10S
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (82844583..82863498)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (76149569..76168494)

    Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3b subunit 1 S homeolog Neighboring gene MOB family member 4, phocein S homeolog Neighboring gene heat shock protein family D (Hsp60) member 1 S homeolog Neighboring gene heat shock protein family E (Hsp10) member 1 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC132359

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    splicing factor, arginine/serine-rich 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001088933.1 → NP_001082402.1  splicing factor, arginine/serine-rich 10

      See identical proteins and their annotated locations for NP_001082402.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108873
      UniProtKB/TrEMBL
      Q2VPF1, Q7ZTM8
      Related
      ENSXLAP00005050791.1, ENSXLAT00005051954.1
      Conserved Domains (2) summary
      COG0724
      Location:114 → 198
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12641
      Location:113 → 201
      RRM_TRA2B; RNA recognition motif in Transformer-2 protein homolog beta (TRA-2 beta) and similar proteins

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      82844583..82863498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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