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    b4galnt2.2 beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group), tandelm duplication 2 [ Danio rerio (zebrafish) ]

    Gene ID: 557782, updated on 9-Dec-2024

    Summary

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    Official Symbol
    b4galnt2.2provided by ZNC
    Official Full Name
    beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group), tandelm duplication 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-731
    See related
    Ensembl:ENSDARG00000070605 AllianceGenome:ZFIN:ZDB-GENE-130530-731
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process and UDP-N-acetylglucosamine metabolic process. Predicted to be located in membrane. Orthologous to human B4GALNT2 (beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group)). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See b4galnt2.2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (23045200..23059288)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (22917429..22928782)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490563 Neighboring gene N-acetylglutamate synthase Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group), tandem duplication 1 Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acetylgalactosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in UDP-N-acetylgalactosamine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in UDP-N-acetylglucosamine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    beta-1,4 N-acetylgalactosaminyltransferase 2
    Names
    beta-1,4-N-acetyl-galactosaminyl transferase 2, tandem duplicate 2
    zmp:0000000728

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      23045200..23059288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354751.3 → XP_017210240.1  beta-1,4 N-acetylgalactosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A8M6Z522, X1WCP8
      Related
      ENSDARP00000127995.1, ENSDART00000157090.3
      Conserved Domains (1) summary
      cl11394
      Location:238 → 346
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394530.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      114783..128831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471414.2 → XP_021327089.1  beta-1,4 N-acetylgalactosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A8M9PQC6
      Conserved Domains (1) summary
      cl11394
      Location:238 → 346
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. XM_068218095.1 → XP_068074196.1  beta-1,4 N-acetylgalactosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A8M9PQC6
    Nucleotide Protein
    Heading Accession and Version

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