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    brd8a bromodomain containing 8a [ Danio rerio (zebrafish) ]

    Gene ID: 100003763, updated on 9-Dec-2024

    Summary

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    Official Symbol
    brd8aprovided by ZNC
    Official Full Name
    bromodomain containing 8aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091113-54
    See related
    Ensembl:ENSDARG00000055999 AllianceGenome:ZFIN:ZDB-GENE-091113-54
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-59d17.3
    Summary
    Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human BRD8 (bromodomain containing 8). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See brd8a in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (30194846..30240512)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (30157976..30200101)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488826 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 18 Neighboring gene family with sequence similarity 53 member C Neighboring gene stem-loop binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    bromodomain-containing protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      30194846..30240512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017352982.3 → XP_017208471.1  bromodomain-containing protein 8 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z376
      Related
      ENSDARP00000118139.1, ENSDART00000137023.2

    2. XM_017352983.3 → XP_017208472.1  bromodomain-containing protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M6YV99
      Related
      ENSDARP00000072865.6, ENSDART00000078403.6

    3. XM_017352985.3 → XP_017208474.1  bromodomain-containing protein 8 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z3W3
    Nucleotide Protein
    Heading Accession and Version

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