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    Agenet domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835283, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Agenet domain-containing protein
    Primary source
    TAIR:AT5G52070
    Locus tag
    AT5G52070
    See related
    Araport:AT5G52070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSG15.17; MSG15_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (21161132..21165565)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001344979.1
    NM_001344980.1
    NM_001344981.1
    NM_001344982.1
    NM_124586.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Agenet domain-containing protein
    NP_200020.2
    • Agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT5G42670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21161132..21165565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344978.1 → NP_001331711.1  Agenet domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK74, Q9FJ85

    2. NM_124586.4 → NP_200020.2  Agenet domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200020.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDX4, A0A654GAN9, Q8RXR3
      Conserved Domains (2) summary
      smart00743
      Location:104 → 164
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:11 → 80
      Agenet; Agenet domain

    3. NM_001344979.1 → NP_001331707.1  Agenet domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK74, A0A1P8BEQ4

    4. NM_001344980.1 → NP_001331709.1  Agenet domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDX4, A0A654GAN9, Q8RXR3
      Conserved Domains (2) summary
      smart00743
      Location:104 → 164
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:11 → 80
      Agenet; Agenet domain

    5. NM_001344981.1 → NP_001331710.1  Agenet domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK74, Q9FJ85

    6. NM_001344982.1 → NP_001331708.1  Agenet domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK74, Q9FJ85
    Nucleotide Protein
    Heading Accession and Version

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