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    Ribosomal protein S13/S18 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844111, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S13/S18 family
    Primary source
    TAIR:AT1G77750
    Locus tag
    AT1G77750
    See related
    Araport:AT1G77750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RPS13; T32E8.8; T32E8_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (29229990..29231727, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pleckstrin homology (PH) domain superfamily protein Neighboring gene phosphatidylinositol-4-phosphate 5-kinase 2 Neighboring gene nitrate reductase 1 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Adams KL, et al. Plant Cell, 2002 Apr. PMID 11971146, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106424.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of mitochondrial small ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal protein S13/S18 family
    NP_177898.1
    • Ribosomal protein S13/S18 family; FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: mitochondrion, small ribosomal subunit, mitochondrial small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S18 family (TAIR:AT5G14320.1); Has 8693 Blast hits to 8691 proteins in 3066 species: Archae - 159; Bacteria - 5380; Metazoa - 191; Fungi - 172; Plants - 691; Viruses - 0; Other Eukaryotes - 2100 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29229990..29231727 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106424.4 → NP_177898.1  Ribosomal protein S13/S18 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177898.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CA19
      UniProtKB/TrEMBL
      A0A178WJD6, A0A5S9WV84
      Conserved Domains (1) summary
      cl00331
      Location:33 → 150
      Ribosomal_S13; Ribosomal protein S13/S18
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CA19.1

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