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    Late embryogenesis abundant protein, group 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816843, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Late embryogenesis abundant protein, group 6
    Primary source
    TAIR:AT2G23110
    Locus tag
    AT2G23110
    See related
    Araport:AT2G23110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21P24.17; F21P24_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (9840456..9841366)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Late embryogenesis abundant protein, group 6 Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202653.2
    NM_127875.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Late embryogenesis abundant protein, group 6
    NP_001189582.1
    • Late embryogenesis abundant protein, group 6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 6 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 6 (TAIR:AT2G23120.1).
    NP_179892.1
    • Late embryogenesis abundant protein, group 6; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 6 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 6 (TAIR:AT2G23120.1); Has 37 Blast hits to 37 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9840456..9841366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127875.3 → NP_179892.1  Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179892.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXM2, O64820
      Conserved Domains (1) summary
      pfam10714
      Location:14 → 92
      LEA_6; Late embryogenesis abundant protein 18

    2. NM_001202653.2 → NP_001189582.1  Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189582.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXM2, O64820
      Conserved Domains (1) summary
      pfam10714
      Location:14 → 92
      LEA_6; Late embryogenesis abundant protein 18
    Nucleotide Protein
    Heading Accession and Version

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