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    SP3 Sp3 transcription factor [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102567337, updated on 3-Dec-2024

    Summary

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    Gene symbol
    SP3
    Gene description
    Sp3 transcription factor
    Locus tag
    Y1Q_0011499
    See related
    EnsemblRapid:ENSAMIG00015025355
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See SP3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (210696585..210731795)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714267.1 (8034256..8069481)

    Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109281412 Neighboring gene Obg like ATPase 1 Neighboring gene uncharacterized LOC109281415 Neighboring gene dynein beta chain, ciliary-like Neighboring gene cell division cycle associated 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Sp3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081827.1 Reference rAllMis1 Primary Assembly

      Range
      210696585..210731795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059727278.1 → XP_059583261.1  transcription factor Sp3

      UniProtKB/TrEMBL
      A0A151LZY9
      Related
      ENSAMIP00015034940.1, ENSAMIT00015048030.1
    Nucleotide Protein
    Heading Accession and Version

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