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    Pli E3 ubiquitin-protein ligase pellino [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 662980, updated on 6-Jun-2024

    Summary

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    Gene symbol
    Pli
    Gene description
    E3 ubiquitin-protein ligase pellino
    Locus tag
    TcasGA2_TC009672
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See Pli in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (20936039..20948127, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (3820533..3832674)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene peroxynitrite isomerase THAP4 Neighboring gene Leucine-rich repeat 47 Neighboring gene Transcriptional adapter 2B Neighboring gene Minichromosome maintenance 5 Neighboring gene aldo-keto reductase family 1 member A1-B Neighboring gene Mau2 sister chromatid cohesion factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Toll signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein pellino
    Names
    AUGUSTUS-3.0.2_33602
    GLEAN_09672
    Pellino
    Protein pellino-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      20936039..20948127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064355406.1 → XP_064211476.1  protein pellino isoform X1

      UniProtKB/TrEMBL
      A0A139WFK7

    2. XM_962215.5 → XP_967308.1  protein pellino isoform X3

      UniProtKB/TrEMBL
      A0A139WFQ2
      Conserved Domains (1) summary
      pfam04710
      Location:23 → 428
      Pellino

    3. XM_008197238.3 → XP_008195460.1  protein pellino isoform X2

      Conserved Domains (1) summary
      pfam04710
      Location:33 → 438
      Pellino; Pellino
    Nucleotide Protein Strain
    Heading Accession and Version

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