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    LOC107262822 silk gland factor 1 [ Cephus cinctus (wheat stem sawfly) ]

    Gene ID: 107262822, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC107262822
    Gene description
    silk gland factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cephus cinctus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Cephoidea; Cephidae; Cephus
    Orthologs
    honey bee all
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    Genomic context

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    See LOC107262822 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current Ccin1 (GCF_000341935.1) Unplaced Scaffold NW_014332862.1 (1287994..1293023)

    NW_014332862.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain-containing protein 15-like Neighboring gene uncharacterized LOC107262826 Neighboring gene uncharacterized LOC107262818 Neighboring gene uncharacterized LOC112493701 Neighboring gene CCA tRNA nucleotidyltransferase 1, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_014332862 Unplaced Scaffold Reference Ccin1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    silk gland factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cephus cinctus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ccin1 Primary Assembly

    Genomic

    1. NW_014332862.1 Reference Ccin1 Primary Assembly

      Range
      1287994..1293023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015729394.1 → XP_015584880.1  silk gland factor 1

      UniProtKB/TrEMBL
      A0AAJ7FCD5
      Conserved Domains (2) summary
      smart00339
      Location:150 → 238
      FH; FORKHEAD
      pfam08430
      Location:26 → 149
      Forkhead_N; Forkhead N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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