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    LINC03093 long intergenic non-protein coding RNA 3093 [ Homo sapiens (human) ]

    Gene ID: 101929172, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC03093provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3093provided by HGNC
    Primary source
    HGNC:HGNC:56723
    See related
    Ensembl:ENSG00000254334 AllianceGenome:HGNC:56723
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.9) See more
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    Genomic context

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    See LINC03093 in Genome Data Viewer
    Location:
    8p21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (21298239..21309449)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (21567678..21578888)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (21155750..21166960)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379316 Neighboring gene long intergenic non-protein coding RNA 2153 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:20924620-20925236 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:20925197-20926396 Neighboring gene uncharacterized LOC124901902 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:21024826-21026025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27066 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:21227350-21227872 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:21323916-21324086 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:21349495-21350694 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21406697-21407198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21407199-21407698 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:21417498-21418697 Neighboring gene uncharacterized LOC107986922 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:21507398-21507984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21550331-21550831 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:21584471-21584972 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102784 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21625596-21626586 Neighboring gene GDNF family receptor alpha 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:21639775-21640276 Neighboring gene olfactory receptor family 6 subfamily R member 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expression profiling and bioinformatics analysis of exosomal long noncoding RNAs in patients with myasthenia gravis by RNA sequencing. Lu W, et al. J Clin Lab Anal, 2021 Apr. PMID 33543801, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104677.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021355, AK057515
      Related
      ENST00000519996.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      21298239..21309449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      21567678..21578888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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