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    LOC123119942 MADS-box transcription factor 13-like [ Triticum aestivum (bread wheat) ]

    Gene ID: 123119942, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC123119942
    Gene description
    MADS-box transcription factor 13-like
    See related
    EnsemblRapid:TraesCS5D03G0283800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Triticum aestivum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
    Also known as
    AGL9; MAF1; WM3A; AGL31
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    Genomic context

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    See LOC123119942 in Genome Data Viewer
    Location:
    chromosome: 5D
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 5D NC_057808.1 (157222112..157227669, complement)

    Chromosome 5D - NC_057808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123119940 Neighboring gene protein FLX-like 3 Neighboring gene uncharacterized LOC123124507 Neighboring gene uncharacterized LOC123124508

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057808.1 Chromosome 5D Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat. Kippes N, et al. Mol Genet Genomics, 2014 Feb. PMID 24213553, Free PMC Article
    2. Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like genes in wheat (Triticum aestivum L.). Paolacci AR, et al. Mol Genet Genomics, 2007 Dec. PMID 17846794
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MADS-box transcription factor 13-like
    Names
    MADS-box transcription factor AGL31
    MADS-box transcription factor TaAGL31
    MADS-box transcription factor TaAGL9
    MIKC-type MADS-box transcription factor WM3A
    flowering related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Genomic

    1. NC_057808.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

      Range
      157222112..157227669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044539919.1 → XP_044395854.1  MADS-box transcription factor 13-like

      UniProtKB/TrEMBL
      A0A219KVL6, A9J1W4, Q1G161
      Conserved Domains (2) summary
      cd00265
      Location:2 → 74
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:84 → 174
      K-box; K-box region

    2. XM_044539920.1 → XP_044395855.1  MADS-box transcription factor 13-like

      UniProtKB/TrEMBL
      A0A219KVL6, A9J1W4, Q1G161
      Related
      TraesCS5D03G0283800, TraesCS5D03G0283800.1
      Conserved Domains (2) summary
      cd00265
      Location:2 → 74
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:84 → 174
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version

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