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    GLC HXXXD-type acyl-transferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842857, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GLC
    Official Full Name
    HXXXD-type acyl-transferase family protein
    Primary source
    TAIR:AT1G65450
    Locus tag
    AT1G65450
    See related
    Araport:AT1G65450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GLAUCE; T8F5.23; T8F5_23
    Summary
    Contains dual transcription units and alternative splicing that could rescue the sterility defect of glc mutants. Shares homology to BAHD (for BEAT, AHCT, HCBT, and DAT) acyl-transferases. Functions in double fertilization.
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    Genomic context

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    See GLC in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (24315722..24319092)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene IBR domain-containing protein Neighboring gene global transcription factor group B1 Neighboring gene chromatin assembly factor-1 (FASCIATA1) (FAS1) Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of the glauce mutant: a central cell-specific function is required for double fertilization in Arabidopsis. Leshem Y, et al. Plant Cell, 2012 Aug. PMID 22872756, Free PMC Article
    2. Arabidopsis GLAUCE promotes fertilization-independent endosperm development and expression of paternally inherited alleles. Ngo QA, et al. Development, 2007 Nov. PMID 17965055
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • At1g65450_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At1g65450_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001198389.2
    NM_001198390.2
    NM_105220.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within double fertilization forming a zygote and endosperm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HXXXD-type acyl-transferase family protein
    NP_001185318.1
    • HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (TAIR:AT5G48930.1).
    NP_001185319.1
    • HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1).
    NP_564853.2
    • HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1); Has 2085 Blast hits to 2084 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 2050; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24315722..24319092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105220.3 → NP_564853.2  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564853.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80816, Q1PFG7, Q8LDZ6
      UniProtKB/TrEMBL
      A0A178W297, A0A5S9WTG0
      Conserved Domains (1) summary
      pfam02458
      Location:16 → 448
      Transferase; Transferase family

    2. NM_001198389.2 → NP_001185318.1  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185318.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8L9X4
      Conserved Domains (1) summary
      cl23789
      Location:15 → 136
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    3. NM_001198390.2 → NP_001185319.1  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185319.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2C6
      Conserved Domains (1) summary
      pfam02458
      Location:1 → 284
      Transferase; Transferase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80816.1

    Gene LinkOut

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