U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    O-Glycosyl hydrolases family 17 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837730, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    O-Glycosyl hydrolases family 17 protein
    Primary source
    TAIR:AT1G11820
    Locus tag
    AT1G11820
    See related
    Araport:AT1G11820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3991027..3993707, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ncRNA Neighboring gene glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Plasmodesmata-Located β-1,3-Glucanase Enzyme PdBG4 Regulates Trichomes Growth in Arabidopsis thaliana. Fan Y, et al. Cells, 2022 Sep 13. PMID 36139431, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001332003.1
    NM_101054.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucan endo-1,3-beta-D-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    O-Glycosyl hydrolases family 17 protein
    NP_001184967.1
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1).
    NP_172647.2
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2127 Blast hits to 2113 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2117; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3991027..3993707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198038.2 → NP_001184967.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184967.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IAH7, O65399, Q84W37
      UniProtKB/TrEMBL
      A0A178WFD7, A0A5S9TYJ1
      Conserved Domains (2) summary
      smart00768
      Location:380 → 465
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:44 → 361
      Glyco_hydro; Glycosyl hydrolases

    2. NM_101054.3 → NP_172647.2  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172647.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IAH8
      Conserved Domains (1) summary
      cl23725
      Location:44 → 361
      Glyco_hydro_1; Glycosyl hydrolase family 1

    3. NM_001332003.1 → NP_001323381.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWX9
      Conserved Domains (2) summary
      smart00768
      Location:380 → 459
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:44 → 361
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65399.3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.