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    CRA1 RmlC-like cupins superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834435, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CRA1
    Official Full Name
    RmlC-like cupins superfamily protein
    Primary source
    TAIR:AT5G44120
    Locus tag
    AT5G44120
    See related
    Araport:AT5G44120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    12S STORAGE PROTEIN; ATCRA1; CRU1; CRUCIFERINA; MLN1.4; MLN1_4
    Summary
    Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
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    Genomic context

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    See CRA1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (17756238..17758336, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene casein kinase I-like 7 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene FASCICLIN-like arabinogalactan protein 13 precursor Neighboring gene prohibitin 7 Neighboring gene phosphorelay protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple internal sorting determinants can contribute to the trafficking of cruciferin to protein storage vacuoles. Hegedus DD, et al. Plant Mol Biol, 2015 May. PMID 25702284
    2. Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteases. Gruis DF, et al. Plant Cell, 2002 Nov. PMID 12417707, Free PMC Article
    3. Protein tyrosine kinases and protein tyrosine phosphatases are involved in abscisic acid-dependent processes in Arabidopsis seeds and suspension cells. Ghelis T, et al. Plant Physiol, 2008 Nov. PMID 18768909, Free PMC Article
    4. Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Deruyffelaere C, et al. Plant Cell Physiol, 2015 Jul. PMID 25907570
    5. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Protein modelling was used to identify candidate internal sorting determinants residing near surface-exposed regions in Arabidopsis thaliana cruciferin A (AtCruA).
      Title: Multiple internal sorting determinants can contribute to the trafficking of cruciferin to protein storage vacuoles.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_123779.5
    NM_180796.1
    NM_180797.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nutrient reservoir activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nutrient reservoir activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to abscisic acid stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in seed maturation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RmlC-like cupins superfamily protein
    NP_199225.1
    • CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1); Has 1047 Blast hits to 1009 proteins in 168 species: Archae - 0; Bacteria - 115; Metazoa - 2; Fungi - 0; Plants - 930; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851127.1
    • CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1); Has 984 Blast hits to 960 proteins in 164 species: Archae - 0; Bacteria - 115; Metazoa - 2; Fungi - 0; Plants - 867; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_851128.1
    • CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1); Has 1024 Blast hits to 991 proteins in 167 species: Archae - 0; Bacteria - 115; Metazoa - 2; Fungi - 0; Plants - 907; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17756238..17758336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123779.5 → NP_199225.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199225.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P15455, Q3E711, Q56Z11, Q9FFH7
      UniProtKB/TrEMBL
      A0A178UG52, A0A654G7W3, A0A7G2FEA6
      Conserved Domains (2) summary
      PLN00212
      Location:1 → 449
      PLN00212; glutelin; Provisional
      pfam00190
      Location:296 → 444
      Cupin_1; Cupin

    2. NM_180796.1 → NP_851127.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851127.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K8S2
      Conserved Domains (1) summary
      pfam00190
      Location:109 → 257
      Cupin_1; Cupin

    3. NM_180797.1 → NP_851128.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851128.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P15455
      Conserved Domains (2) summary
      pfam00190
      Location:192 → 340
      Cupin_1; Cupin
      cl21464
      Location:31 → 132
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P15455.2

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