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    MYF5 myogenic factor 5 [ Anas platyrhynchos (mallard) ]

    Gene ID: 101801755, updated on 8-Mar-2024

    Summary

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    Gene symbol
    MYF5
    Gene description
    myogenic factor 5
    Locus tag
    Anapl_06744
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See MYF5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (42271534..42272726)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (161093688..161094879, complement)

    Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type Q Neighboring gene uncharacterized LOC119713970 Neighboring gene uncharacterized LOC106020128 Neighboring gene myogenic factor 6 Neighboring gene lin-7 homolog A, crumbs cell polarity complex component Neighboring gene uncharacterized LOC110354458

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lentivirus-mediated RNA interference of myostatin gene affects MyoD and Myf5 gene expression in duck embryonic myoblasts. Tao Z, et al. Br Poult Sci, 2015. PMID 26301941
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in muscle organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of myoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myogenic factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310776.1 → NP_001297705.1  myogenic factor 5

      See identical proteins and their annotated locations for NP_001297705.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ938240
      UniProtKB/TrEMBL
      D6BU30
      Conserved Domains (3) summary
      smart00520
      Location:1 → 90
      BASIC; Basic domain in HLH proteins of MYOD family
      pfam00010
      Location:86 → 137
      HLH; Helix-loop-helix DNA-binding domain
      pfam12232
      Location:145 → 217
      Myf5; Myogenic determination factor 5

    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051772.1 Reference ZJU1.0 Primary Assembly

      Range
      42271534..42272726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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