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    CASP-like protein (DUF1677) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844316, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CASP-like protein (DUF1677)
    Primary source
    TAIR:AT1G79770
    Locus tag
    AT1G79770
    See related
    Araport:AT1G79770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20B17.20; F20B17_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (30014233..30015392)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NADP-malic enzyme 4 Neighboring gene downstream target of AGL15-4 Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene early nodulin-like protein 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106626.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CASP-like protein (DUF1677)
    NP_565220.1
    • Protein of unknown function (DUF1677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1677) (TAIR:AT5G25840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30014233..30015392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106626.3 → NP_565220.1  CASP-like protein (DUF1677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565220.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAP4, A0A654EQF4, Q9CA85
      Conserved Domains (1) summary
      pfam07911
      Location:52 → 139
      DUF1677; Protein of unknown function (DUF1677)
    Nucleotide Protein
    Heading Accession and Version

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