U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830069, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT4G39140
    Locus tag
    AT4G39140
    See related
    Araport:AT4G39140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F8.40; T22F8_40
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (18229094..18232202, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene inositol monophosphatase family protein Neighboring gene Dehydrin family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene Homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001085045.1
    NM_120074.2
    NM_179191.1
    NM_202982.4
    NM_202983.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING/U-box superfamily protein
    NP_001078514.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
    NP_195625.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
    NP_849522.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
    NP_974711.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974712.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18229094..18232202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202983.2 → NP_974712.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974712.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZX3, A0A654FWV5, Q9T023
      Conserved Domains (2) summary
      cd00162
      Location:260 → 318
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:260 → 319
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_202982.4 → NP_974711.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZX3, A0A654FWV5, Q9T023
      Conserved Domains (2) summary
      cd00162
      Location:260 → 318
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:260 → 319
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_179191.1 → NP_849522.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849522.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZX3, A0A654FWV5, Q9T023
      Conserved Domains (2) summary
      cd00162
      Location:260 → 318
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:260 → 319
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. NM_120074.2 → NP_195625.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195625.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZX3, A0A654FWV5, Q9T023
      Conserved Domains (2) summary
      cd00162
      Location:260 → 318
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:260 → 319
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. NM_001085045.1 → NP_001078514.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078514.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZX3, A0A654FWV5, Q9T023
      Conserved Domains (2) summary
      cd00162
      Location:260 → 318
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:260 → 319
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools