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    CMPG1 CYS, MET, PRO, and GLY protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842931, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CMPG1
    Official Full Name
    CYS, MET, PRO, and GLY protein 1
    Primary source
    TAIR:AT1G66160
    Locus tag
    AT1G66160
    See related
    Araport:AT1G66160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''CYS; and GLY protein 1; and GLY protein 1''; ATCMPG1; CYS; F15E12.6; F15E12_6; MET; PRO
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    Genomic context

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    See CMPG1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (24637196..24638608)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 18 Neighboring gene transmembrane kinase 1 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A U-Box E3 ubiquitin ligase, PUB20, interacts with the Arabidopsis G-protein β subunit, AGB1. Kobayashi S, et al. PLoS One, 2012. PMID 23166612, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105287.2
    NM_179516.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    CYS, MET, PRO, and GLY protein 1
    NP_564866.1
    • ''CYS, MET, PRO, and GLY protein 1'' (CMPG1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 2372 Blast hits to 2357 proteins in 158 species: Archae - 0; Bacteria - 16; Metazoa - 212; Fungi - 52; Plants - 1883; Viruses - 3; Other Eukaryotes - 206 (source: NCBI BLink).
    NP_849847.1
    • ''CYS, MET, PRO, and GLY protein 1'' (CMPG1); FUNCTIONS IN: binding; INVOLVED IN: response to chitin; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 1454 Blast hits to 1441 proteins in 68 species: Archae - 0; Bacteria - 10; Metazoa - 52; Fungi - 8; Plants - 1378; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24637196..24638608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105287.2 → NP_564866.1  CYS, MET, PRO, and GLY protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564866.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB50, Q9C8D1
      UniProtKB/TrEMBL
      A0A178WD99
      Conserved Domains (1) summary
      smart00504
      Location:37 → 99
      Ubox; Modified RING finger domain

    2. NM_179516.1 → NP_849847.1  CYS, MET, PRO, and GLY protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849847.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WD99, F4ID86
      Conserved Domains (1) summary
      cl17238
      Location:33 → 83
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8D1.1

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