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    TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 [ Condylura cristata (star-nosed mole) ]

    Gene ID: 101624937, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TIAL1
    Gene description
    TIA1 cytotoxic granule associated RNA binding protein like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Condylura cristata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
    Orthologs
    human mouse all
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    Genomic context

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    See TIAL1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567112.1 (5669891..5690786)

    NW_004567112.1Genomic Context describing neighboring genes Neighboring gene BAG cochaperone 3 Neighboring gene uncharacterized LOC105853504 Neighboring gene regulator of G protein signaling 10 Neighboring gene G protein-coupled receptor kinase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004567112.1 Unplaced Scaffold Reference ConCri1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleolysin TIAR

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ConCri1.0

    Genomic

    1. NW_004567112.1 Reference ConCri1.0

      Range
      5669891..5690786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012723738.1 → XP_012579192.1  nucleolysin TIAR isoform X4

      See identical proteins and their annotated locations for XP_012579192.1

      Conserved Domains (4) summary
      cd12616
      Location:10 → 107
      RRM1_TIAR; RNA recognition motif 1 in nucleolysin TIAR and similar proteins
      cd12617
      Location:113 → 192
      RRM2_TIAR; RNA recognition motif 2 in nucleolysin TIAR and similar proteins
      cd12620
      Location:222 → 294
      RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
      TIGR01661
      Location:7 → 288
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    2. XM_012723739.1 → XP_012579193.1  nucleolysin TIAR isoform X4

      See identical proteins and their annotated locations for XP_012579193.1

      Conserved Domains (4) summary
      cd12616
      Location:10 → 107
      RRM1_TIAR; RNA recognition motif 1 in nucleolysin TIAR and similar proteins
      cd12617
      Location:113 → 192
      RRM2_TIAR; RNA recognition motif 2 in nucleolysin TIAR and similar proteins
      cd12620
      Location:222 → 294
      RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
      TIGR01661
      Location:7 → 288
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    3. XM_004680392.2 → XP_004680449.1  nucleolysin TIAR isoform X1

      See identical proteins and their annotated locations for XP_004680449.1

      Conserved Domains (3) summary
      cd12620
      Location:222 → 294
      RRM3_TIAR; RNA recognition motif 3 (RRM3) found in nucleolysin TIAR and similar proteins
      cd12616
      Location:10 → 107
      RRM1_TIAR; RNA recognition motif 1 (RRM1) found in nucleolysin TIAR and similar proteins
      cd12617
      Location:113 → 192
      RRM2_TIAR; RNA recognition motif 2 (RRM2) found in nucleolysin TIAR and similar proteins

    4. XM_004680393.2 → XP_004680450.1  nucleolysin TIAR isoform X2

      See identical proteins and their annotated locations for XP_004680450.1

      Conserved Domains (3) summary
      cd12620
      Location:205 → 277
      RRM3_TIAR; RNA recognition motif 3 (RRM3) found in nucleolysin TIAR and similar proteins
      cd12616
      Location:10 → 90
      RRM1_TIAR; RNA recognition motif 1 (RRM1) found in nucleolysin TIAR and similar proteins
      cd12617
      Location:96 → 175
      RRM2_TIAR; RNA recognition motif 2 (RRM2) found in nucleolysin TIAR and similar proteins

    5. XM_012723737.1 → XP_012579191.1  nucleolysin TIAR isoform X3

      See identical proteins and their annotated locations for XP_012579191.1

      Conserved Domains (3) summary
      cd12620
      Location:183 → 255
      RRM3_TIAR; RNA recognition motif 3 (RRM3) found in nucleolysin TIAR and similar proteins
      cd12617
      Location:74 → 153
      RRM2_TIAR; RNA recognition motif 2 (RRM2) found in nucleolysin TIAR and similar proteins
      cl17169
      Location:19 → 68
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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