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    SREK1 splicing regulatory glutamic acid and lysine rich protein 1 [ Propithecus coquereli (Coquerel's sifaka) ]

    Gene ID: 105826618, updated on 13-Mar-2024

    Summary

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    Gene symbol
    SREK1
    Gene description
    splicing regulatory glutamic acid and lysine rich protein 1
    See related
    Ensembl:ENSPCOG00000026230
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Propithecus coquereli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
    Orthologs
    human mouse all
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    Genomic context

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    See SREK1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012155284.1 (14030029..14064958, complement)

    NW_012155284.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105826617 Neighboring gene microtubule-associated serine/threonine-protein kinase 4-like Neighboring gene erbb2 interacting protein Neighboring gene WD repeat-containing protein 1 pseudogene Neighboring gene U6 snRNA-associated Sm-like protein LSm3 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012155284.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing regulatory glutamine/lysine-rich protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Pcoq_1.0 Primary Assembly

    Genomic

    1. NW_012155284.1 Reference Pcoq_1.0 Primary Assembly

      Range
      14030029..14064958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012664611.1 → XP_012520065.1  splicing regulatory glutamine/lysine-rich protein 1 isoform X2

      Conserved Domains (2) summary
      cd12260
      Location:178 → 263
      RRM2_SREK1; RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins
      cd12519
      Location:20 → 99
      RRM1_SREK1; RNA recognition motif 1 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

    2. XM_012664609.1 → XP_012520063.1  splicing regulatory glutamine/lysine-rich protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A2K6GMJ3
      Related
      ENSPCOP00000027463.1, ENSPCOT00000038285.1
      Conserved Domains (2) summary
      cd12260
      Location:178 → 263
      RRM2_SREK1; RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins
      cd12519
      Location:20 → 99
      RRM1_SREK1; RNA recognition motif 1 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

    3. XM_012664612.1 → XP_012520066.1  splicing regulatory glutamine/lysine-rich protein 1 isoform X3

      Conserved Domains (2) summary
      cd12260
      Location:136 → 221
      RRM2_SREK1; RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins
      cl17169
      Location:13 → 57
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_012664613.1 → XP_012520067.1  splicing regulatory glutamine/lysine-rich protein 1 isoform X4

      See identical proteins and their annotated locations for XP_012520067.1

      UniProtKB/TrEMBL
      A0A2K6GMJ8, A0A2K6GMN3
      Related
      ENSPCOP00000027467.1, ENSPCOT00000038289.1
      Conserved Domains (1) summary
      cl17169
      Location:20 → 98
      RRM_SF; RNA recognition motif (RRM) superfamily

    RNA

    1. XR_001138323.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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